SNP Profiles matching GS 13

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	TT	CC	AG	AA	CC	AA	CC	GG	GG	AA	CC
1._MAR_1	_	_	CC	TT	CC	_	AA	-	AA	CC	_	_	AA	_
2._MAR_20	_	_	CC	TT	CC	_	AA	-	AA	CC	_	_	AA	_
3._RUQ_554	TT	CC	CC	TT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
4._RUQ_557	TT	CC	CC	TT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
5._RUQ_553	TT	CC	CC	TT	CC	GG	AA	CC	AA	-	GG	GG	AA	-
6._RUQ_549	TT	AC	CC	TT	CC	AG	AA	CC	AA	CC	GG	GG	-	CC
7._RUQ_678	TT	CC	CC	TT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
8._RUQ_648	TT	CC	AA	TT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	TT	GG	AA	CC	TT	TT	GG	GG	TT	CC	CG	CC
1._MAR_1	AA	CC	TT	GG	AA	_	TT	_	-	_	_	_	GG	CC
2._MAR_20	AA	CC	TT	GG	AA	_	TT	_	-	_	_	_	GG	CC
3._RUQ_554	AA	CC	TT	GG	AA	CC	CC	TT	GG	GG	TT	CC	GG	CC
4._RUQ_557	AA	CC	TT	GG	AA	CC	TT	TT	GG	GG	TT	AA	GG	CC
5._RUQ_553	-	CC	-	GG	AA	TT	TT	TT	GG	-	TT	-	-	CC
6._RUQ_549	AA	CC	TT	GG	AA	CC	TT	TT	GG	GG	TT	AC	GG	CC
7._RUQ_678	AA	CC	TT	GG	CC	TT	TT	TT	GG	GG	TT	CC	GG	CC
8._RUQ_648	AA	CC	TT	GG	AA	CC	CC	TT	GG	GG	TT	CC	GG	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41
_Input profile	CC	AA	TT	CC	GG	AA	TT	TT	TT	TT	CC	GG	AA	X_X
1._MAR_1	CC	AA	_	CC	_	_	_	TT	_	_	CC	GG	AA	X_X
2._MAR_20	CC	AA	_	CC	_	_	_	TT	_	_	CC	GG	AA	X_X
3._RUQ_554	CC	AA	TT	CC	GG	AA	TT	TT	TT	TT	CC	GG	AA	X_X
4._RUQ_557	CC	AA	TT	CC	GG	AA	TT	TT	TT	TT	CC	GG	AA	X_X
5._RUQ_553	CC	AA	-	CC	GG	-	TT	TT	TT	-	-	GG	AA	X_X
6._RUQ_549	CC	AA	TT	CC	GG	AA	TT	TT	CT	TT	CC	GG	AA	X_X
7._RUQ_678	CC	AA	TT	CC	GG	AA	TT	TT	TT	TT	CC	GG	AA	X_X
8._RUQ_648	CC	AA	TT	CC	GG	GG	TT	TT	TT	TT	CC	GG	AA	X_X

Input profile: GS_13 RUQ_683

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._MAR_1

97.7 %
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A B188 T1

Dapeng Zhang, 2014

2._MAR_20

97.7 %
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A B253 T1

Dapeng Zhang, 2014

3._GDL_7 RUQ_554

95.1 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._MAR_9 RUQ_557

95.1 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

5._GDL_3 RUQ_553

95 %
30 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

6._DOM_30 RUQ_549

95 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

7._LCT_EEN_62_/S-4 RUQ_678

92.7 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

8._GF_32 RUQ_648

90.2 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP560	18	TcSNP577	19	TcSNP591	20	TcSNP602
21	TcSNP619	22	TcSNP702	23	TcSNP723	24	TcSNP731	25	TcSNP799
26	TcSNP823	27	TcSNP872	28	TcSNP878	29	TcSNP891	30	TcSNP998
31	TcSNP999	32	TcSNP1060	33	TcSNP1063	34	TcSNP1111	35	TcSNP1126
36	TcSNP1253	37	TcSNP1309	38	TcSNP1439	39	TcSNP1442	40	TcSNP1458
41	TcSNP1484

SNP Profiles matching GS 13

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Input profile: GS_13 RUQ_683

1._MAR_1

97.7 % 22 shared markers

2._MAR_20

97.7 % 22 shared markers

3._GDL_7 RUQ_554

95.1 % 41 shared markers

4._MAR_9 RUQ_557

95.1 % 41 shared markers

5._GDL_3 RUQ_553

95 % 30 shared markers

6._DOM_30 RUQ_549

95 % 40 shared markers

7._LCT_EEN_62_/S-4 RUQ_678

92.7 % 41 shared markers

8._GF_32 RUQ_648

90.2 % 41 shared markers

97.7 %
22 shared markers

97.7 %
22 shared markers

95.1 %
41 shared markers

95.1 %
41 shared markers

95 %
30 shared markers

95 %
40 shared markers

92.7 %
41 shared markers

90.2 %
41 shared markers